TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7447061; SRA: ERS5205259

Organism: Mediterraneibacter glycyrrhizinilyticus
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1867865604_MAG163
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:08Z
ENA-LAST-UPDATE	2020-10-15T10:32:53Z
External Id	SAMEA7447061
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:08Z
INSDC last update	2020-10-15T10:32:53Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1867865604_MAG163
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	90.16
completeness software	CheckM;v1.0.13
contamination score	0.47
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408596,SAMN09409163,SAMN09409236,SAMN09409318,SAMN09409386,SAMN09410077,SAMN09410387,SAMN09410863,SAMN09411058,SAMN09411777,SAMN09411876,SAMN09412520,SAMN09412647,SAMN09413273,SAMN09413442,SAMN09413712,SAMN09414005,SAMN09414071,SAMN09414085,SAMN09414312,SAMN09414312,SAMN09414668,SAMN09414677,SAMN09415669,SAMN09415881,SAMN09416091,SAMN09416955,SAMN09416969,SAMN09417079,SAMN09417132,SAMN09418002,SAMN09418684,SAMN09419111,SAMN09419622,SAMN09419708,SAMN09420046,SAMN09420260,SAMN09420515,SAMN09421056
scientific_name	Mediterraneibacter glycyrrhizinilyticus
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1867865604: SRR7561436,SRR7562079,SRR7559587,SRR7561342,SRR7557415,SRR7568675,SRR7567447,SRR7563987,SRR7558601,SRR7560688,SRR7558105,SRR7559146,SRR7567813,SRR7569090,SRR7557959,SRR7562295,SRR7558271,SRR7556897,SRR7566764,SRR7567285,SRR7567286,SRR7564906,SRR7559530,SRR7561187,SRR7565021,SRR7565974,SRR7558346,SRR7560736,SRR7565408,SRR7557720,SRR7568879,SRR7558624,SRR7557463,SRR7567124,SRR7565892,SRR7566210,SRR7558019,SRR7563705,SRR7566202

Submission: EBI; 2021-02-02

Accession:: SAMEA7447061
ID:: 17757949

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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