TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7448848; SRA: ERS5207043

Organism: Gleimia europaea
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Actinomycetales; Actinomycetaceae; Gleimia

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1938000446_MAG7
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:10:02Z
ENA-LAST-UPDATE	2020-10-15T10:58:11Z
External Id	SAMEA7448848
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:10:02Z
INSDC last update	2020-10-15T10:58:11Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1938000446_MAG7
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	95.48
completeness software	CheckM;v1.0.13
contamination score	0.47
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09408402,SAMN09409009,SAMN09409039,SAMN09409511,SAMN09409715,SAMN09409820,SAMN09410565,SAMN09410565,SAMN09410805,SAMN09410805,SAMN09411201,SAMN09411760,SAMN09412463,SAMN09412463,SAMN09412789,SAMN09413064,SAMN09413953,SAMN09414868,SAMN09415011,SAMN09415196,SAMN09415196,SAMN09415481,SAMN09416330,SAMN09416727,SAMN09416753,SAMN09417353,SAMN09418179,SAMN09418271,SAMN09418271,SAMN09418388,SAMN09418589,SAMN09418589,SAMN09418867,SAMN09420457,SAMN09420603,SAMN09420943,SAMN09420977,SAMN09420977,SAMN09421068
scientific_name	Gleimia europaea
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1938000446: SRR7560567,SRR7561227,SRR7561102,SRR7565586,SRR7564680,SRR7569427,SRR7567150,SRR7567149,SRR7568999,SRR7568998,SRR7557734,SRR7565261,SRR7556908,SRR7556909,SRR7559321,SRR7569177,SRR7558489,SRR7569082,SRR7569466,SRR7568768,SRR7568767,SRR7565610,SRR7564458,SRR7560436,SRR7560386,SRR7562212,SRR7569843,SRR7557528,SRR7557529,SRR7559053,SRR7561424,SRR7561425,SRR7567858,SRR7557003,SRR7566238,SRR7564573,SRR7561266,SRR7561267,SRR7560037

Submission: EBI; 2021-02-02

Accession:: SAMEA7448848
ID:: 17759524

BioSample

National Center for Biotechnology Information

Result Filters

Send to:

TEDDY OU Gut MAG

Supplemental Content

Recent activity