TEDDY OU Gut MAG

Identifiers: BioSample: SAMEA7449066; SRA: ERS5207261

Organism: Merdimonas faecis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Merdimonas

Attributes

collection date	not provided
broad-scale environmental context	human gut
local-scale environmental context	human gut
environmental medium	fecal
geographic location	restricted access
host sex	male
investigation type	metagenome-assembled genome
isolation source	human gut
project name	PRJEB40730
sample name	TEDDY_OU_SUBJ1948771613_MAG1
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2021-01-30T04:09:59Z
ENA-LAST-UPDATE	2020-10-15T11:01:39Z
External Id	SAMEA7449066
INSDC center name	Pan Lab at OU
INSDC first public	2021-01-30T04:09:59Z
INSDC last update	2020-10-15T11:01:39Z
INSDC status	public
MAG coverage software	bowtie2; v2.3.5.1
Submitter Id	TEDDY_OU_SUBJ1948771613_MAG1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	SPAdes;3.13.1;default parameters with metaSPAdes mode
binning parameters	--minContig 2000
binning software	MetaBAT;2.12.1
completeness score	92.17
completeness software	CheckM;v1.0.13
contamination score	2.34
geographic location (latitude)	restricted access
geographic location (longitude)	restricted access
metagenomic source	human gut metagenome
sample derived from	SAMN09409034,SAMN09409388,SAMN09411691,SAMN09411756,SAMN09412555,SAMN09414803,SAMN09415301,SAMN09415402,SAMN09416148,SAMN09416226,SAMN09417491,SAMN09419034,SAMN09419437,SAMN09419852,SAMN09419925,SAMN09420215,SAMN09420608,SAMN09420637,SAMN09421169
scientific_name	Merdimonas faecis
sequencing method	Illumina HiSeq 2000
taxonomic classification	GTDB-Tk;v1.3.0(reference from GTDB Release 95,species rank classification,default parameters)
taxonomic identity marker	multi-marker approach

Description: This sample represents a metagenomic bin co-assembled from the metagenomic run(s) of subject 1948771613: SRR7558284,SRR7568735,SRR7557356,SRR7564562,SRR7556919,SRR7561945,SRR7558052,SRR7557689,SRR7557627,SRR7561010,SRR7565460,SRR7567864,SRR7561495,SRR7557541,SRR7566913,SRR7560462,SRR7568927,SRR7561586,SRR7566375

Submission: EBI; 2021-02-02

Accession:: SAMEA7449066
ID:: 17759742

BioSample

National Center for Biotechnology Information

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TEDDY OU Gut MAG

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