Invertebrate sample from Athalia rosae

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Athalia rosae (coleseed sawfly)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pterygota; Neoptera; Endopterygota; Hymenoptera; Tenthredinoidea; Athaliidae; Athalia

Attributes

sample type	RNA
sex	male
isolate	SSL9
breed	NA
host	NA
isolation source	F4 bred from wild ind
collection date	2019-10-08
geographic location	Germany: Bielefeld
tissue	Whole animal
species_type	Insect
developmetal_stage	L4 larvae
collection	Adults killed in liquid nitrogen and then stored at -80oC until extraction.
extraction	Invitrogen PureLink RNA Mini Kit with on column DNase treatment.
nucleic_acid_type	total RNA
final_sample	Dissolved RNA-free or DEPC treated water
Conc. (ng/ ul)	785
Vol (ul)	20
Total Amount (ng)	15700
Total Amount (ug)	15.7
sequencing_platform	NovaSeq6000 with S4 Flowcells (Illumina, CA, United States)
raw_reads	50916344
clean_reads	50429585
raw_base(g)	15.3
clean_base(g)	15.1
effective_rate(%)	99.04
error_rate(%)	0.03
q20(%)	97.91
q30(%)	94.01
gc_content(%)	42.88