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Metagenome-assembled genome: E09__bin38

Identifiers
BioSample: SAMEA110136500; SRA: ERS12235320
Organism
uncultured Opitutales bacterium
cellular organisms; Bacteria; PVC group; Verrucomicrobiota; Opitutia; Opitutales; environmental samples
Attributes
collection date2016
broad-scale environmental contexthost-associated habitat
local-scale environmental contexthost-associated habitat
environmental mediumcaecal content
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcechicken caecal content
project nameMetaChick
sample nameE09__bin38
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-06-17
ENA-LAST-UPDATE2022-06-17
External IdSAMEA110136500
INSDC center aliasINRA-META
INSDC center nameInstitut National pour la Recherche Agronomique (FRANCE)
INSDC first public2022-06-17T16:20:10Z
INSDC last update2022-06-17T16:20:10Z
INSDC statuspublic
Submitter IdE09__bin38
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSPAdes 3.15.3
binning parametersMetaBAT default parameters
binning softwareMetaBAT v2.12.1
completeness score91.22
completeness softwarecheckm v1.1.3
contamination score2.03
geographic location (latitude)48.8583
geographic location (longitude)2.2923
geographic location (region and locality)Jouy-en-Josas
metagenomic sourcechicken gut metagenome
sample derived fromERS4542322,ERS4542323,ERS4542324,ERS4542325,ERS4542326,ERS4542327,ERS4542328,ERS4542329,ERS4542330,ERS4542331
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a metagenomic bin from the metagenomic sample(s) ERS4542322,ERS4542323,ERS4542324,ERS4542325,ERS4542326,ERS4542327,ERS4542328,ERS4542329,ERS4542330,ERS4542331

BioProject
PRJEB53581
Retrieve all samples from this project

Submission
EBI; 2022-06-18
Accession:
SAMEA110136500
ID:
29196675

BioProject Nucleotide

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