Metagenome-assembled genome: ERR1855543_bin.34_met... - BioSample

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Metagenome-assembled genome: ERR1855543_bin.34_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110402078; SRA: ERS12500270

Organism: uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples

Attributes

broad-scale environmental context	Pig digestive system
collection date	2016-08-01
environmental medium	Feces
geographic location	Germany
investigation type	metagenome-assembled genome
isolation source	pig gut metagenome
project name	We studied the intestinal microbiome in feces from sows, five days after farrowing, their piglets during suckling and two weeks after weaning, 5-day old artificially reared and formula-fed siblings, and FP infected with Clostridium difficile.
sample name	ERR1855543_bin.34_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-21T20:27:51Z
ENA-LAST-UPDATE	2022-07-21T20:27:51Z
External Id	SAMEA110402078
INSDC center name	EMG
INSDC first public	2022-07-21T20:27:51Z
INSDC last update	2022-07-21T20:27:51Z
INSDC status	public
Submitter Id	ERR1855543_bin.34_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EBI-EMG
completeness score	96.98
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	52.45857
geographic location (longitude)	13.288657
local environmental context	Intestine
metagenomic source	pig gut metagenome
sample derived from	SAMEA99907168
scientific_name	uncultured Clostridium sp.
sequencing method	NextSeq 500
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Clostridiaceae;g__Clostridium;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1855543 of study ERP021695.