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Metagenome-assembled genome: SRR11489790_bin.69_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110412147; SRA: ERS12510502
Organism
Treponema succinifaciens
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema
Attributes
broad-scale environmental contextPig digestive system
collection date2017-03-05
environmental mediumGut content
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcepig gut metagenome
project nameFind the difference of gut microbial community structure and function diversity under LDA exposure
sample nameSRR11489790_bin.69_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-25
ENA-LAST-UPDATE2022-07-25
External IdSAMEA110412147
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-25T20:32:52Z
INSDC last update2022-07-25T20:32:52Z
INSDC statuspublic
Submitter IdSRR11489790_bin.69_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score96.5
completeness softwareCheckM
contamination score0.0
geographic location (latitude)30.3
geographic location (longitude)103.0
local environmental contextIntestine
metagenomic sourcepig gut metagenome
sample derived fromSAMN14543218
sequencing methodIllumina HiSeq 3000
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Spirochaetes;c__Spirochaetia;o__Spirochaetales;f__Spirochaetaceae;g__Treponema;s__Treponema succinifaciens
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11489790 of study SRP118553.

Submission
EBI; 2022-07-26
Accession:
SAMEA110412147
ID:
29972591

BioProject Nucleotide

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