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Metagenome-assembled genome: SRR11784285_bin.40_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110586515; SRA: ERS12684297
Organism
uncultured Prevotellaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; environmental samples
Attributes
broad-scale environmental contextSheep digestive system
collection datenot provided
environmental mediumRumen content
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcesheep gut metagenome
project nameRumen metagenome based on Illumina Hiseq
sample nameSRR11784285_bin.40_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-09T16:29:48Z
ENA-LAST-UPDATE2022-08-09T16:29:48Z
External IdSAMEA110586515
INSDC center nameEMG
INSDC first public2022-08-09T16:29:48Z
INSDC last update2022-08-09T16:29:48Z
INSDC statuspublic
Submitter IdSRR11784285_bin.40_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEBI-EMG
completeness score91.05
completeness softwareCheckM
contamination score2.72
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextRumen
metagenomic sourcesheep gut metagenome
sample derived fromSAMN14884642
scientific_nameuncultured Prevotellaceae bacterium
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Bacteroidetes;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR11784285 of study SRP261434.

BioProject
PRJEB54624
Retrieve all samples from this project

Submission
EBI; 2022-08-10
Accession:
SAMEA110586515
ID:
30233541

BioProject Nucleotide

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