Metagenome-assembled genome: JtgDid2MmW_bin.9.MAG

Organism: uncultured Stenotrophomonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	human-associated habitat
local-scale environmental context	human skin
environmental medium	skin
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human skin
project name	Skin Microbial Genome Catalogue
sample name	JtgDid2MmW_bin.9.MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-10
ENA-LAST-UPDATE	2022-08-10
External Id	SAMEA110089286
INSDC center alias	NIH/NHGRI
INSDC center name	NIH/NHGRI
INSDC first public	2022-08-10T16:27:25Z
INSDC last update	2022-08-10T16:27:25Z
INSDC status	public
Submitter Id	JtgDid2MmW_bin.9.MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v.3.13.0
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the Metawrap pipeline. Bin refinement module used from metawrap with default parameters
binning software	metaWRAP v1.2.1
completeness score	71.03
completeness software	CheckM v1.1.2
contamination score	71.03
geographic location (latitude)	38.984653
geographic location (longitude)	-77.09471
metagenomic source	human skin metagenome
sample derived from	SAMN04359763,SAMN04359797,SAMN04359831,SAMN04359864,SAMN04359922,SAMN04359951,SAMN04360010,SAMN04360044,SAMN04360078,SAMN04360111,SAMN04360130,SAMN04360148
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

Description: This sample represents a Pool Site Metagenome-Assembled Genome (MAG) from the metagenomic run(s): SRR3182032,SRR3182033,SRR3182034,SRR3182035,SRR3182036,SRR3183283,SRR3183284,SRR3183285,SRR3183592,SRR3183593,SRR3183594,SRR3183595,SRR3183596,SRR3183880,SRR3183881,SRR3183882,SRR3184338,SRR3184339,SRR3184340,SRR3184498,SRR3184499,SRR3185149,SRR3185150,SRR3185151,SRR3185152,SRR3185153,SRR3187139,SRR3187140,SRR3187141,SRR3187142,SRR3187143,SRR3188124,SRR3189150,SRR3189151,SRR3189152,SRR3189153,SRR3189154,SRR3191617,SRR3191618,SRR3191619,SRR3191620,SRR3191621,SRR3191699,SRR3191700,SRR3191701,SRR3191702,SRR3191703.

BioProject: PRJEB47281 Skin Microbial Genome Catalogue
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