Metagenome-assembled genome: SRR17188289_bin.3_met... - BioSample

Metagenome-assembled genome: SRR17188289_bin.3_metawrap_v1.3.0_MAG

Identifiers: BioSample: SAMEA110698754; SRA: ERS12796292

Organism: uncultured Lactobacillus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus; environmental samples

Attributes

broad-scale environmental context	honeybee
collection date	2017-09-01
environmental medium	gut
geographic location	China
investigation type	metagenome-assembled genome
isolation source	honeybee metagenome
project name	A. mellifera microbiome
sample name	SRR17188289_bin.3_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-24
ENA-LAST-UPDATE	2022-08-24
External Id	SAMEA110698754
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-24T12:18:12Z
INSDC last update	2022-08-24T12:18:12Z
INSDC status	public
Submitter Id	SRR17188289_bin.3_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	98.95
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	43.82
geographic location (longitude)	126.56
local environmental context	digestive system
metagenomic source	honeybee metagenome
sample derived from	SAMN23803071
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus mellifer
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17188289 of study SRP350118.

BioProject: PRJEB55270
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Submission: EBI; 2022-08-25

Accession:: SAMEA110698754
ID:: 30495808

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Metagenome-assembled genome: SRR17188289_bin.3_metawrap_v1.3.0_MAG

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