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Metagenome-assembled genome: SRR17188300_bin.3_metawrap_v1.3.0_MAG

Identifiers
BioSample: SAMEA110698762; SRA: ERS12796300
Organism
Gilliamella apicola
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Orbales; Orbaceae; Gilliamella
Attributes
broad-scale environmental contexthoneybee
collection date2017-09-01
environmental mediumgut
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcehoneybee metagenome
project nameA. mellifera microbiome
sample nameSRR17188300_bin.3_metawrap_v1.3.0_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-08-24
ENA-LAST-UPDATE2022-08-24
External IdSAMEA110698762
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-08-24T12:18:13Z
INSDC last update2022-08-24T12:18:13Z
INSDC statuspublic
Submitter IdSRR17188300_bin.3_metawrap_v1.3.0_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetawrap v1.3.0
broker nameEMG broker account, EMBL-EBI
completeness score98.87
completeness softwareCheckM
contamination score0.61
geographic location (latitude)43.82
geographic location (longitude)126.56
local environmental contextdigestive system
metagenomic sourcehoneybee metagenome
sample derived fromSAMN23803052
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Orbales;f__Orbaceae;g__Gilliamella;s__Gilliamella apicola
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR17188300 of study SRP350118.

BioProject
PRJEB55270
Retrieve all samples from this project

Submission
EBI; 2022-08-25
Accession:
SAMEA110698762
ID:
30495816

BioProject Nucleotide

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