Metagenome-assembled genome: SRR12181036_bin.9_met... - BioSample

Metagenome-assembled genome: SRR12181036_bin.9_metawrap_v1.3.0_MAG

Identifiers: BioSample: SAMEA110701642; SRA: ERS12799180

Organism: Lactobacillus apis
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus

Attributes

broad-scale environmental context	honeybee
collection date	2018-01-01
environmental medium	gut
geographic location	China
investigation type	metagenome-assembled genome
isolation source	honeybee metagenome
project name	Gut microbes have a close relationship with host and plays a significant role in the health of host.
sample name	SRR12181036_bin.9_metawrap_v1.3.0_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-08-24
ENA-LAST-UPDATE	2022-08-24
External Id	SAMEA110701642
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-08-24T16:16:14Z
INSDC last update	2022-08-24T16:16:14Z
INSDC status	public
Submitter Id	SRR12181036_bin.9_metawrap_v1.3.0_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metawrap v1.3.0
broker name	EMG broker account, EMBL-EBI
completeness score	97.4
completeness software	CheckM
contamination score	0.76
geographic location (latitude)	43.31
geographic location (longitude)	126.48
local environmental context	digestive system
metagenomic source	honeybee metagenome
sample derived from	SAMN15488395
sequencing method	HiSeq X Ten
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus apis
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR12181036 of study SRP271039.

BioProject: PRJEB55166
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Submission: EBI; 2022-08-25

Accession:: SAMEA110701642
ID:: 30496157

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Metagenome-assembled genome: SRR12181036_bin.9_metawrap_v1.3.0_MAG

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