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Metagenome-assembled genome: SRR8387720_bin.6_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA111499173; SRA: ERS13592937
Organism
Butyrivibrio proteoclasticus
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Butyrivibrio
Attributes
broad-scale environmental contextSheep digestive system
collection date2016-02-18
environmental mediumRumen content
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcesheep gut metagenome
project nameRuminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model.
sample nameSRR8387720_bin.6_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-10-21
ENA-LAST-UPDATE2022-10-21
External IdSAMEA111499173
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-10-21T20:21:51Z
INSDC last update2022-10-21T20:21:51Z
INSDC statuspublic
Submitter IdSRR8387720_bin.6_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score75.68
completeness softwareCheckM
contamination score3.15
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextRumen
metagenomic sourcesheep gut metagenome
sample derived fromSAMN10688363
sequencing methodHiSeq X Ten
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Clostridia;o__Clostridiales;f__Lachnospiraceae;g__Butyrivibrio;s__Butyrivibrio proteoclasticus
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR8387720 of study SRP175061.

BioProject
PRJEB56573
Retrieve all samples from this project

Submission
EBI; 2022-10-22
Accession:
SAMEA111499173
ID:
31414864

BioProject Nucleotide

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