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Aspartate - 3

Identifiers
BioSample: SAMEA110196489; SRA: ERS12294164
Organism
Cupriavidus necator H16
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus; Cupriavidus necator
Attributes
genotypeΔmmsA1 ΔmmsA2 ΔmmsA3 ΔphaCAB
tissuewhole organism
sample nameE-MTAB-11897:Aspartate - 3
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2022-11-21
ENA-LAST-UPDATE2022-12-19
External IdSAMEA110196489
INSDC center aliasBBSRC/EPSRC Synthetic Biology Research Centre (SBRC), Biodiscovery Institute, School of Life Sciences, The University of Nottingham
INSDC center nameBBSRC/EPSRC Synthetic Biology Research Centre (SBRC), Biodiscovery Institute, School of Life Sciences, The University of Nottingham
INSDC first public2022-11-21T16:00:06Z
INSDC last update2022-12-19T00:24:58Z
INSDC statuspublic
Submitter IdE-MTAB-11897:Aspartate - 3
broker nameArrayExpress
growth condition2%SGMM containing 4 g/l (NH4)2SO4
Description

Protocols: Samples were collected at the early exponential growth phase (OD600 ~1) and treated with RNAprotect Bacteria Reagent (QIAGEN, Germany) according to the manufacturer instructions. C. necator H16 ΔmmsA123 ΔphaCAB colonies were used to inoculate tubes containing 5 ml of LB. Each tube was incubated at 30°C overnight with shaking at 200 rpm. Precultures were centrifugated at 8000 rpm for 3 min, washed twice and used to prepare 25 ml of culture at OD600 ~0.1 in a 250 ml baffled flask. 2%SGMM containing 4 g/l (NH4)2SO4 with and without 4 g/l aspartate was used as the culture medium. The flasks were incubated at 30°C with shaking at 200 rpm. Performed by GENEWIZ Performed by GENEWIZ

BioProject
PRJEB53978 RNA-seq of C. necator H16 ΔmmsA123 ΔphaCAB cells grown with and without supplementation of aspartate
Retrieve all samples from this project

Submission
EBI; 2022-11-22
Accession:
SAMEA110196489
ID:
31832056

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