U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Binned metagenome: ERR4336989_bin.74_MetaWRAP_v1.1_bin

Identifiers
BioSample: SAMEA112266978; SRA: ERS14377833
Organism
Methanobrevibacter woesei
cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Methanomada group; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobrevibacter
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-10-15
environmental mediumCaecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameHoloFood Chicken -- MAG Catalogue data
sample nameERR4336989_bin.74_MetaWRAP_v1.1_bin
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2022-12-22
ENA-LAST-UPDATE2022-12-22
External IdSAMEA112266978
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2022-12-22T20:22:10Z
INSDC last update2022-12-22T20:22:10Z
INSDC statuspublic
Submitter IdERR4336989_bin.74_MetaWRAP_v1.1_bin
assembly softwareunknown v0.0
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM
contamination score0.0
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7025277
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Archaea;p__Euryarchaeota;c__Methanobacteria;o__Methanobacteriales;f__Methanobacteriaceae;g__Methanobrevibacter;s__Methanobrevibacter woesei
taxonomic identity markermulti-marker approach
Description

This sample represents a binned metagenome assembled from the metagenomic run ERR4336989 of study ERP122587.

Submission
EBI; 2022-12-23
Accession:
SAMEA112266978
ID:
32392180

Supplemental Content

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center