Metagenome-assembled genome: SRR2103019_bin.24_CON... - BioSample

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Result Filters

Organism: uncultured Moraxellaceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; environmental samples

Attributes

collection date	2011-10-15
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Aquatic
geographic location	Saudi Arabia
investigation type	metagenome-assembled genome
isolation source	aquatic metagenome
project name	An expedition spanning nearly the entire eastern Red Sea. We sampled at eight stations along this route, sampling from the surface down to 500m.
sample name	SRR2103019_bin.24_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA13959189
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:31:54Z
INSDC last update	2023-01-03T00:31:54Z
INSDC status	public
Submitter Id	SRR2103019_bin.24_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.03
geographic location (latitude)	23.36
geographic location (longitude)	37.3
metagenomic source	aquatic metagenome
sample derived from	SAMN03860289
scientific_name	uncultured Moraxellaceae bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2103019 of study SRP061183.

BioProject: PRJEB51071 Large-scale analysis of novel cellular microbes from the aquatic biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2103019_bin.24_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2103019_bin.24_CONCOCT_v1.1_MAG

biosample
protein FAM81A isoform X1 [Homo sapiens]
protein FAM81A isoform X1 [Homo sapiens]
gi|530405398|ref|XP_005254223.1|

Protein
LOC132441760 [Mus musculus]
LOC132441760 [Mus musculus]
Gene ID:132441760

Gene
Cupped ribs
Cupped ribs

MedGen

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