Metagenome-assembled genome: SRR5214706_bin.59_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Chloroflexus sp.
cellular organisms; Bacteria; Terrabacteria group; Chloroflexota; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; environmental samples

Attributes

collection date	2015-06-21
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Aquatic
geographic location	South Africa
investigation type	metagenome-assembled genome
isolation source	aquatic metagenome
project name	Microbial Dark Matter project phase II - Metagenome sequencing of Hot spring microbial communities
sample name	SRR5214706_bin.59_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA13959257
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:31:56Z
INSDC last update	2023-01-03T00:31:56Z
INSDC status	public
Submitter Id	SRR5214706_bin.59_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	-22.6092
geographic location (longitude)	30.1749
metagenomic source	aquatic metagenome
sample derived from	SAMN06264664
scientific_name	uncultured Chloroflexus sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5214706 of study SRP098349.

BioProject: PRJEB51071 Large-scale analysis of novel cellular microbes from the aquatic biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5214706_bin.59_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5214706_bin.59_CONCOCT_v1.1_MAG

biosample
Homo sapiens mRNA for Mel-18 protein, complete cds
Homo sapiens mRNA for Mel-18 protein, complete cds
gi|285932|dbj|D13969.1|HUMMEL18

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample