Metagenome-assembled genome: ERR599298_bin.2_CONCO... - BioSample

Metagenome-assembled genome: ERR599298_bin.2_CONCOCT_v1.1_MAG

Organism: Micromonas commoda
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Attributes

collection date	2010-12-06
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Seawater was filtered from different depths to retain small and large cell sizes. The DNA was extracted and submitted to high throughput sequencing.
sample name	ERR599298_bin.2_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14035969
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:12Z
INSDC last update	2023-01-03T00:32:12Z
INSDC status	public
Submitter Id	ERR599298_bin.2_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MegaHit
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.8
completeness software	CheckM
contamination score	1.0
geographic location (latitude)	-47.1863
geographic location (longitude)	-58.2902
metagenomic source	marine metagenome
sample derived from	SAMEA2621412
scientific_name	Micromonas commoda
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599298 of study ERP003628.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project