Metagenome-assembled genome: SRR7299214_bin.110_CO... - BioSample

Metagenome-assembled genome: SRR7299214_bin.110_CONCOCT_v1.1_MAG

Organism: Allochromatium vinosum
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Chromatiales; Chromatiaceae; Allochromatium

Attributes

collection date	2015-06-15
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Jamaica
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Metagenome sequence of the microbial community from an open air leachate pond from the Riverton City dump servicing Kingston, St. Andrews, St. Catherine, and St. Thomas in Jamaica.
sample name	SRR7299214_bin.110_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082539
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:20Z
INSDC last update	2023-01-03T00:32:20Z
INSDC status	public
Submitter Id	SRR7299214_bin.110_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	71.64
completeness software	CheckM
contamination score	4.3
geographic location (latitude)	18.01052
geographic location (longitude)	-76.85667
metagenomic source	metagenome
sample derived from	SAMN09401598
scientific_name	Allochromatium vinosum
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7299214 of study SRP150380.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project