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MGBC127279

Identifiers
BioSample: SAMEA112400731; SRA: ERS14511041
Organism
Aerococcus urinaeequi
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Lactobacillales; Aerococcaceae; Aerococcus
Attributes
broad-scale environmental contextmouse gut
collection datenot provided
environmental mediumFaeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcefeces
project nameMetagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample nameMGBC127279
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-02-03
ENA-LAST-UPDATE2023-02-03
External IdSAMEA112400731
INSDC center aliasUNIVERSITY OF CAMBRIDGE
INSDC center nameUNIVERSITY OF CAMBRIDGE
INSDC first public2023-02-03T00:46:57Z
INSDC last update2023-02-03T00:46:57Z
INSDC statuspublic
Submitter IdMGBC127279
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes_v3.10.1
binning parametersdefault parameters, kmer: 4
binning softwaremetaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score89.40
completeness softwareCheckM
contamination score3.13
geographic location (latitude)30.47399
geographic location (longitude)114.34837
local environmental contextmouse-associated habitat
metagenomic sourcemouse gut metagenome
sample derived fromERR3199667
scientific_nameAerococcus urinaeequi
sequencing methodIllumina
taxonomic identity markermulti-marker approach
BioProject
PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

Submission
EBI; 2023-02-06
Accession:
SAMEA112400731
ID:
33110773

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