MGBC133431

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Erysipelotrichaceae bacterium
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC133431
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:42:24Z
ENA-LAST-UPDATE	2023-02-03T00:42:24Z
External Id	SAMEA112406350
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:42:24Z
INSDC last update	2023-02-03T00:42:24Z
INSDC status	public
Submitter Id	MGBC133431
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	100
completeness software	CheckM
contamination score	0.00
geographic location (latitude)	32.07
geographic location (longitude)	118.78
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	SRR5574501
scientific_name	uncultured Erysipelotrichaceae bacterium
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC133431
MGBC133431

biosample
Rumen Uncultured Genome RUG12893
Rumen Uncultured Genome RUG12893

biosample
Uncultured Bacillus sp. clone 96D 16S ribosomal RNA gene, partial sequence
Uncultured Bacillus sp. clone 96D 16S ribosomal RNA gene, partial sequence
gi|195933897|gb|EU887840.1|

Nucleotide
Anagrus sp. BOLD:AAN8044 voucher BIOUG08724-F05 cytochrome oxidase subunit 1 (CO...
Anagrus sp. BOLD:AAN8044 voucher BIOUG08724-F05 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial
gi|1018233540|gnl|uoguelph|CNROI243 OI-5P|gb|KR418434.1|

Nucleotide
Homo sapiens cDNA, FLJ17218
Homo sapiens cDNA, FLJ17218
gi|164691562|dbj|AK310176.1|

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample