MGBC135386

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Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC135386
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:43:38Z
ENA-LAST-UPDATE	2023-02-03T00:43:38Z
External Id	SAMEA112408297
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:43:38Z
INSDC last update	2023-02-03T00:43:38Z
INSDC status	public
Submitter Id	MGBC135386
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit_v1.1.1-2-g02102e1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	57.35
completeness software	CheckM
contamination score	0.00
geographic location (latitude)	37.767815
geographic location (longitude)	-122.39416
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	SRR5927701
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC135386
MGBC135386

biosample
metabat2_coassembly_bwa.577 MAG
metabat2_coassembly_bwa.577 MAG

biosample
Xenopus laevis oncomodulin 4 gene 5 S homeolog (ocm4.5.S), mRNA
Xenopus laevis oncomodulin 4 gene 5 S homeolog (ocm4.5.S), mRNA
gi|1069984347|ref|NM_001086050.2|

Nucleotide
ubiquitin carboxyl-terminal hydrolase 47 isoform X1 [Homo sapiens]
ubiquitin carboxyl-terminal hydrolase 47 isoform X1 [Homo sapiens]
gi|1034574344|ref|XP_016873443.1|

Protein
forkhead-associated domain-containing protein 1 isoform X7 [Rattus norvegicus]
forkhead-associated domain-containing protein 1 isoform X7 [Rattus norvegicus]
gi|1958778172|ref|XP_038966568.1|

Protein

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