MGBC142407

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Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC142407
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:47:14Z
ENA-LAST-UPDATE	2023-02-03T00:47:14Z
External Id	SAMEA112412697
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:47:14Z
INSDC last update	2023-02-03T00:47:14Z
INSDC status	public
Submitter Id	MGBC142407
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	83.73
completeness software	CheckM
contamination score	2.56
geographic location (latitude)	42.33597
geographic location (longitude)	-71.10115
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	SRR11404569
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC142407
MGBC142407

biosample
MGBC165839
MGBC165839

biosample
Uncultured bacterium clone 2 16S ribosomal RNA gene, partial sequence
Uncultured bacterium clone 2 16S ribosomal RNA gene, partial sequence
gi|1277465014|gb|MG518493.1|

Nucleotide

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