MGBC155729

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Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	Singapore
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC155729
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:48:32Z
ENA-LAST-UPDATE	2023-02-03T00:48:32Z
External Id	SAMEA112425948
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:48:32Z
INSDC last update	2023-02-03T00:48:32Z
INSDC status	public
Submitter Id	MGBC155729
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	90.26
completeness software	CheckM
contamination score	1.57
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERR4078556
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC155729
MGBC155729

biosample
Triticum aestivum strain CRB-INRA-CFD-2153 malate dehydrogenase (Mdh4B) gene, pa...
Triticum aestivum strain CRB-INRA-CFD-2153 malate dehydrogenase (Mdh4B) gene, partial cds
gi|129920567|gb|EF109240.1|

Nucleotide
Rattus norvegicus spermatogenesis associated glutamate (E)-rich protein 4C like ...
Rattus norvegicus spermatogenesis associated glutamate (E)-rich protein 4C like 8 (Speer4cl8), transcript variant 2, non-coding RNA
gi|2777372479|ref|NR_197253.1|

Nucleotide
zi85b07.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA clone IMAGE:4475...
zi85b07.s1 Soares_fetal_liver_spleen_1NFLS_S1 Homo sapiens cDNA clone IMAGE:447541 3', mRNA sequence
gi|2705528|gnl|dbEST|1409035|gb|AA7 .1|

Nucleotide

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