MGBC163102

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Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Distal colon
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	Distal colon
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC163102
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:49:11Z
ENA-LAST-UPDATE	2023-02-03T00:49:11Z
External Id	SAMEA112433218
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:49:11Z
INSDC last update	2023-02-03T00:49:11Z
INSDC status	public
Submitter Id	MGBC163102
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	62.16
completeness software	CheckM
contamination score	1.54
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	SRR12474065
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC163102
MGBC163102

biosample
Dromaius baudinianus
Dromaius baudinianus
Dromaius baudinianus

BioProject
RecName: Full=Cytochrome c
RecName: Full=Cytochrome c
gi|119388038|sp|P00018.2|CYC_DRONO

Protein
RecName: Full=Dromaiocalcin-2; Short=DCA-2
RecName: Full=Dromaiocalcin-2; Short=DCA-2
gi|90108432|sp|P84616.2|DCAL2_DRONO

Protein
Homo sapiens mRNA; cDNA DKFZp434N1221 (from clone DKFZp434N1221)
Homo sapiens mRNA; cDNA DKFZp434N1221 (from clone DKFZp434N1221)
gi|6093249|emb|AL122053.1|

Nucleotide

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