MGBC166897

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Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse gut
collection date	not provided
environmental medium	Faeces
geographic location	United Kingdom
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC166897
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-02-03T00:49:55Z
ENA-LAST-UPDATE	2023-02-03T00:49:55Z
External Id	SAMEA112436919
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2023-02-03T00:49:55Z
INSDC last update	2023-02-03T00:49:55Z
INSDC status	public
Submitter Id	MGBC166897
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.10.1
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	66.79
completeness software	CheckM
contamination score	1.68
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse-associated habitat
metagenomic source	mouse gut metagenome
sample derived from	ERR5838564
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach

BioProject: PRJEB59335 Mouse Gastrointestinal Bacteria Catalogue - MAGs
Retrieve all samples from this project

MGBC166897
MGBC166897

biosample
Triticum aestivum strain CRB-INRA-CFD-1232 malate dehydrogenase (Mdh4B) gene, pa...
Triticum aestivum strain CRB-INRA-CFD-1232 malate dehydrogenase (Mdh4B) gene, partial cds
gi|129920561|gb|EF109237.1|

Nucleotide
Homo sapiens BAF chromatin remodeling complex subunit BCL7B (BCL7B), transcript ...
Homo sapiens BAF chromatin remodeling complex subunit BCL7B (BCL7B), transcript variant 3, non-coding RNA
gi|1676452789|ref|NR_036682.2|

Nucleotide

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