Metagenome-assembled genome: extra-ERR2059937.91_1... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples

Attributes

broad-scale environmental context	mouse digestive system
collection date	not provided
environmental medium	feces
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	Lysogeny is prevalent and widely distributed in the murin gut microbiota
sample name	extra-ERR2059937.91_1677761428
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06T04:21:49Z
ENA-LAST-UPDATE	2023-03-06T04:21:49Z
External Id	SAMEA112718465
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T04:21:49Z
INSDC last update	2023-03-06T04:21:49Z
INSDC status	public
Submitter Id	extra-ERR2059937.91_1677761428
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	96.98
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMEA104188572
scientific_name	uncultured Eubacterium sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run ERR2059937 of study ERP024324.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project

Metagenome-assembled genome: extra-ERR2059937.91_1677761428
Metagenome-assembled genome: extra-ERR2059937.91_1677761428

biosample
Scincinae 12S ribosomal RNA gene, partial sequence; mitochondrial.
Scincinae 12S ribosomal RNA gene, partial sequence; mitochondrial.
PopSet: 166952443

PopSet
LAJ77445.1 (0)
Identical Protein Groups
HTLV-I Antigens
HTLV-I Antigens
Antigens associated with HUMAN T-LYMPHOTROPIC VIRUS 1.<br/>Year introduced: 1989

MeSH

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample