Metagenome-assembled genome: extra-SRR7533644.2_16... - BioSample

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Result Filters

Organism: Adlercreutzia mucosicola DSM 19490
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Adlercreutzia; Adlercreutzia mucosicola

Attributes

broad-scale environmental context	mouse digestive system
collection date	2016-09-20
environmental medium	feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	mice gut microbiota Raw sequence reads
sample name	extra-SRR7533644.2_1677800610
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06
ENA-LAST-UPDATE	2023-03-06
External Id	SAMEA112729897
INSDC center alias	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T00:24:55Z
INSDC last update	2023-03-06T00:24:55Z
INSDC status	public
Submitter Id	extra-SRR7533644.2_1677800610
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	65.58
completeness software	CheckM
contamination score	8.68
geographic location (latitude)	34.15
geographic location (longitude)	108.63
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN09667228
scientific_name	Adlercreutzia mucosicola DSM 19490
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR7533644 of study SRP154242.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project