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Metagenome-assembled genome: iMGMC-1124_1678881651

Identifiers
BioSample: SAMEA112816418; SRA: ERS14823960
Organism
uncultured Candidatus Saccharibacteria bacterium
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; environmental samples
Attributes
broad-scale environmental contextmouse digestive system
collection datenot provided
environmental mediumfeces
investigation typemetagenome-assembled genome
isolation sourcemouse gut metagenome
project nameThis sample represents a Metagenome-assembled genome assembled from runs of multiple projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).
sample nameiMGMC-1124_1678881651
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-03-21
ENA-LAST-UPDATE2023-03-21
External IdSAMEA112816418
INSDC center aliasHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC center nameHELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public2023-03-21T12:27:27Z
INSDC last update2023-03-21T12:27:27Z
INSDC statuspublic
Submitter IdiMGMC-1124_1678881651
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremegahit
binning parametersdefault
binning softwaremetabat2
completeness score64.34
completeness softwareCheckM
contamination score0.0
geographic location (latitude)not provided
geographic location (longitude)not provided
local environmental contextmouse gut
metagenomic sourcemouse gut metagenome
sample derived 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scientific_nameuncultured Candidatus Saccharibacteria bacterium
sequencing methodIllumina HiSeq 2000, Illumina MiSeq, Illumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This is a Metagenome-assembled genome derived from the primary whole genome shotgun (WGS) of multiple metagenomic data sets ERP008710,ERP011836,ERP115625. This sample represents a Metagenome-assembled genome from the runs of the following projects: ERP008710 (ERR675308-ERR675687); ERP115625 (ERR3357520-ERR3357594, ERR3357615-ERR3357644); ERP011836 (ERR990521-ERR990523).

Submission
EBI; 2023-03-22
Accession:
SAMEA112816418
ID:
33857818

BioProject Nucleotide

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