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Binned metagenome: ERR4836964_bin.1_MetaWRAP_v1.1_bin

Identifiers
BioSample: SAMEA112343341; SRA: ERS14454251
Organism
Limosilactobacillus ingluviei
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Limosilactobacillus
Attributes
broad-scale environmental contextChicken digestive system
collection date2019-09-30
environmental mediumCaecum
geographic locationSpain
investigation typemetagenome-assembled genome
isolation sourcechicken gut metagenome
project nameMetagenomic raw reads, assemblies, and bins derived from HoloFood chicken caecum samples. Samples selected for this batch were deeply sequenced, and were randomised among trials (feed), age, and breed to overcome batch effect. The samples in this project contributed to the chicken caecum MAG catalogue (project: PRJEB55374 [ERP140263]).
sample nameERR4836964_bin.1_MetaWRAP_v1.1_bin
ENA-CHECKLISTERC000050
ENA-FIRST-PUBLIC2023-03-22
ENA-LAST-UPDATE2023-03-22
External IdSAMEA112343341
INSDC center aliasUNIVERSITY OF COPENHAGEN
INSDC center nameUNIVERSITY OF COPENHAGEN
INSDC first public2023-03-22T12:24:09Z
INSDC last update2023-03-22T12:24:09Z
INSDC statuspublic
Submitter IdERR4836964_bin.1_MetaWRAP_v1.1_bin
assembly softwarenot provided
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.1
broker nameEMG broker account, EMBL-EBI
completeness score99.18
completeness softwareCheckM
contamination score0.0
geographic location (latitude)41.170048
geographic location (longitude)1.168491
local environmental contextDigestive tube
metagenomic sourcechicken gut metagenome
sample derived fromSAMEA7571823
scientific_nameLimosilactobacillus ingluviei
sequencing methodDNBSEQ-G400
taxonomic classificationThe taxonomy of this binned metagenome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus;s__Limosilactobacillus ingluviei
taxonomic identity markermulti-marker approach
Description

This sample represents a binned metagenome assembled from the metagenomic run ERR4836964 of study ERP125074.

Submission
EBI; 2023-03-24
Accession:
SAMEA112343341
ID:
33886569

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