U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

6ec3f298-501d-4041-abdb-204b978cb425-asg-MAGScoT_cleanbin_000046

Identifiers
BioSample: SAMEA113399361; SRA: ERS15394495
Organism
Thermoanaerobaculia bacterium
cellular organisms; Bacteria; Acidobacteriota; Thermoanaerobaculia; unclassified Thermoanaerobaculia
Attributes
broad-scale environmental contextaquatic biome
collected byManuel Maldonado
collection date2021-02-01
depth14
environmental mediumadult sponge tissue
geographic locationSpain
host life stageadult
hostPetrosia ficiformis
host taxonomy ID68564 (68564)
identified byManuel Maldonado
investigation typemetagenome-assembled genome
isolation sourceSponge: Petrosia ficiformis
tissueWHOLE ORGANISM
project nameASG
family rolebeneficial
sample name6ec3f298-501d-4041-abdb-204b978cb425
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-05-03T10:14:21Z
ENA-LAST-UPDATE2023-11-23T13:16:51Z
External IdSAMEA113399361
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
INSDC first public2023-05-03T10:14:21Z
INSDC last update2023-11-23T13:16:51Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id6ec3f298-501d-4041-abdb-204b978cb425
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwareHifiasm (version 0.16.1-r375)
binning parameterscoverage; graph; hic-mapping
binning softwareDASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionCEAB-CSIC
completeness score95.73
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score1.71
geographic location (latitude)41.67333
geographic location (longitude)2.80314
geographic location (region and locality)Girona|Blanes
habitatrocky bottom
identifier_affiliationCEAB-CSIC
local environmental contextmarine benthic biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted55
sample derived fromSAMEA113399216
scientific_nameThermoanaerobaculia bacterium
sequencing methodPacbio Sequel II
specimen idGHC0000184
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidodPetFici3.Thermoanaerobaculia_1
BioProject
PRJEB63040 odPetFici3.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-05-19
Accession:
SAMEA113399361
ID:
35193640

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center