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7a07980b-3b90-469e-aa8f-d9adc7b81d40-asg-MAGScoT_cleanbin_000075

Identifiers
BioSample: SAMEA113399366; SRA: ERS15394500
Organism
uncultured Candidatus Nitrosopumilus sp.
cellular organisms; Archaea; TACK group; Nitrososphaerota; Nitrososphaeria; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; environmental samples
Attributes
broad-scale environmental contextaquatic biome
collected byManuel Maldonado
collection date2021-02-01
depth14
environmental mediumadult sponge tissue
geographic locationSpain
host life stageadult
hostPetrosia ficiformis
host taxonomy ID68564 (68564)
identified byManuel Maldonado
investigation typemetagenome-assembled genome
isolation sourceSponge: Petrosia ficiformis
tissueWHOLE ORGANISM
project nameASG
family rolebeneficial
sample name7a07980b-3b90-469e-aa8f-d9adc7b81d40
specimen voucherNOT PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-05-03T10:14:21Z
ENA-LAST-UPDATE2023-11-23T13:16:53Z
External IdSAMEA113399366
GALGeomar Helmholtz Centre
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
INSDC first public2023-05-03T10:14:21Z
INSDC last update2023-11-23T13:16:53Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id7a07980b-3b90-469e-aa8f-d9adc7b81d40
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwareHifiasm (version 0.16.1-r375)
binning parameterscoverage; graph; hic-mapping
binning softwareDASTOOL (version 1.1.5); MetaBat (version 2.15-15-gd6ea400); bin3C (version 0.3.3); MaxBin (version 2.7); MetaTOR
collecting institutionCEAB-CSIC
completeness score99.03
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.0
geographic location (latitude)41.67333
geographic location (longitude)2.80314
geographic location (region and locality)Girona|Blanes
habitatrocky bottom
identifier_affiliationCEAB-CSIC
local environmental contextmarine benthic biome
metagenomic sourcesponge metagenome
number of standard tRNAs extracted69
sample derived fromSAMEA113399216
scientific_nameuncultured Candidatus Nitrosopumilus sp.
sequencing methodPacbio Sequel II
specimen idGHC0000184
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.1.1); GTDB (release 207_v2)
taxonomic identity markertaxonomic classification defined by topology and ANI
tolidodPetFici3.Candidatus_Nitrosopumilus_sp_1
BioProject
PRJEB63040 odPetFici3.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-05-19
Accession:
SAMEA113399366
ID:
35193645

BioProject Nucleotide

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