U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: SRR15001310_bin.3_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114448003; SRA: ERS16434647
Organism
uncultured Aggregatibacter sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection date2020-12-28
environmental mediumsaliva
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameBy studying the saliva metagenomics of periodontitis patients with Crohn's disease , periodontitis patients, and healthy people, to reveal the mechanism of action of microorganisms
sample nameSRR15001310_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdSRR15001310_bin.3_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score91.31
completeness softwareCheckM
contamination score0.45
geographic location (latitude)32.04
geographic location (longitude)118.77
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMN19896540
scientific_nameuncultured Aggregatibacter sp.
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR15001310 of study SRP326282.

BioProject
PRJEB56857
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114448003
ID:
37599482

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center