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Metagenome-Assembled Genome: ERR10228845_bin.3_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114448475; SRA: ERS16435119
Organism
uncultured Aggregatibacter sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; environmental samples
Attributes
broad-scale environmental contexthuman digestive system
collection date2019-02-13
environmental mediumsaliva
geographic locationPapua New Guinea
investigation typemetagenome-assembled genome
isolation sourceoral metagenome
project nameMetagenomic sequencing of saliva samples from 65 individuals living in different environments of Papua New Guinea (coastal, highlands, lowlands) for the first characterization of oral microbiome diversity in Papua New Guinea.
sample nameERR10228845_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
INSDC center nameEMG
Submitter IdERR10228845_bin.3_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEBI-EMG
completeness score95.28
completeness softwareCheckM
contamination score0.53
geographic location (latitude)-5.7999968
geographic location (longitude)145.0333332
local environmental contextoral cavity
metagenomic sourceoral metagenome
sample derived fromSAMEA110418598
scientific_nameuncultured Aggregatibacter sp.
sequencing methodHiSeq X Five
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10228845 of study ERP139829.

BioProject
PRJEB65450
Retrieve all samples from this project

Submission
EBI; 2023-09-29
Accession:
SAMEA114448475
ID:
37601899

BioProject Nucleotide

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