Metagenome-Assembled Genome: ERR10228851_bin.3_Met... - BioSample

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Result Filters

Metagenome-Assembled Genome: ERR10228851_bin.3_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114448501; SRA: ERS16435145

Organism: uncultured Aggregatibacter sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Aggregatibacter; environmental samples

Attributes

broad-scale environmental context	human digestive system
collection date	2019-02-13
environmental medium	saliva
geographic location	Papua New Guinea
investigation type	metagenome-assembled genome
isolation source	oral metagenome
project name	Metagenomic sequencing of saliva samples from 65 individuals living in different environments of Papua New Guinea (coastal, highlands, lowlands) for the first characterization of oral microbiome diversity in Papua New Guinea.
sample name	ERR10228851_bin.3_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
Submitter Id	ERR10228851_bin.3_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EBI-EMG
completeness score	88.55
completeness software	CheckM
contamination score	0.84
geographic location (latitude)	-5.7999968
geographic location (longitude)	145.0333332
local environmental context	oral cavity
metagenomic source	oral metagenome
sample derived from	SAMEA110418604
scientific_name	uncultured Aggregatibacter sp.
sequencing method	HiSeq X Five
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10228851 of study ERP139829.