| broad-scale environmental context | aquatic biome |
|---|
| collected by | ALJADA | ALVAREZ-ROA |
|---|
| collection date | 2020-12-10 |
|---|
| environmental medium | dinoflagellate culture |
|---|
| geographic location | USA |
|---|
| host life stage | vegetative cell |
|---|
| host | Gerakladium sp. JEP-2021 |
|---|
| host taxonomy ID | 2813772 (2813772) |
|---|
| identified by | JOHN PARKINSON |
|---|
| investigation type | metagenome-assembled genome |
|---|
| isolation source | Dinoflagellate: Gerakladium sp. JEP-2021 |
|---|
| tissue | WHOLE ORGANISM |
|---|
| project name | ASG |
|---|
| sample name | b37e8fa2-d710-4dac-ae71-24a8c2793751 |
|---|
| specimen voucher | NOT PROVIDED |
|---|
| 16S recovered | Yes |
|---|
| 16S recovery software | PROKKA (version 1.14.5) |
|---|
| ENA first public | 2024-01-18 |
|---|
| ENA-CHECKLIST | ERC000047 |
|---|
| GAL | University of Derby |
|---|
| GAL_sample_id | NOT PROVIDED |
|---|
| INSDC center name | Tree of Life Programme |
|---|
| INSDC status | public |
|---|
| MAG coverage software | Minimap2 (version 2.24-r1122) |
|---|
| Submitter Id | b37e8fa2-d710-4dac-ae71-24a8c2793751 |
|---|
| assembly quality | Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better |
|---|
| assembly software | metaMDBG |
|---|
| binning parameters | coverage; graph |
|---|
| binning software | MetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5) |
|---|
| collecting institution | Australian Institute of Marine Science |
|---|
| completeness score | 100 |
|---|
| completeness software | checkM (version 1.2.1); checkM_DB (release 2015-01-16) |
|---|
| contamination score | 0.46 |
|---|
| geographic location (latitude) | not collected |
|---|
| geographic location (longitude) | not collected |
|---|
| geographic location (region and locality) | University Park, PA | Pennsylvania State University |
|---|
| identifier_affiliation | UNIVERSITY OF SOUTH FLORIDA |
|---|
| local environmental context | marine coral reef biome |
|---|
| metagenomic source | dinoflagellate metagenome |
|---|
| number of standard tRNAs extracted | 46 |
|---|
| sample derived from | SAMEA115112818 |
|---|
| scientific_name | Sediminihaliea sp. |
|---|
| sequencing method | Pacbio Sequel II |
|---|
| specimen id | UDUK0000095 |
|---|
| tRNA extraction software | PROKKA (version 1.14.5) |
|---|
| taxonomic classification | GTDB-TK (version 2.3.2); GTDB (release 214) |
|---|
| taxonomic identity marker | taxonomic classification defined by topology and ANI |
|---|
| tolid | pyGerJepo1.Sediminihaliea_sp_1 |
|---|