Herschel Island surface seawater MAG - HER22_SLC_1... - BioSample

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Result Filters

Organism: Pseudoalteromonas nigrifaciens
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas

Attributes

broad-scale environmental context	marine biome [ENVO:00000447]
collection date	2022-07-27
environmental medium	sea water [ENVO:00002149]
geographic location	Canada
investigation type	metagenome
isolation source	sea water
project name	HER19_HER22_MetaG
sample name	HER22_SLC_100_bin_40_1
ENA first public	2024-01-25
ENA-CHECKLIST	ERC000047
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status	public
Submitter Id	HER22_SLC_100_bin_40_1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit v1.2.9
binning parameters	MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 137
binning software	MetaWrap v1.3.2
completeness score	92.28
completeness software	CheckM v1.2
contamination score	0.86
geographic location (latitude)	69.5748
geographic location (longitude)	-138.9515
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERS16475403,ERR12120026
scientific_name	Pseudoalteromonas nigrifaciens
sequencing method	Illumina NextSeq2000
taxonomic identity marker	Multi-marker approach

Description: This sample represents a manually-refined metagenome-assembled genome recovered a metagenome from an Illumina paired-end read metagenome of a surface seawater sample collected around Herschel Island, Canada. The metagenome sample and related assembly can be found under ERS16475403, ERR12120026