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MIMAG Metagenome-assembled Genome sample from Treponema sp.

Identifiers
BioSample: SAMN39889499; Sample name: SO_2016_CLC_T1_3
Organism
Treponema sp.
cellular organisms; Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Treponemataceae; Treponema; unclassified Treponema
Package
MIMAG: metagenome-assembled genome; version 6.0
Attributes
isolateSO_2016_CLC_T1_3
collection date2016-07
broad-scale environmental contextlandfill [ENVO:00000533]
local-scale environmental contextlandfill [ENVO:00000533]
environmental mediumleachate [ENVO:00002141]
geographic locationCanada: Waterloo
isolation sourceleachate from a composite leachate cistern at an active municipal landfill in Southern Ontario
latitude and longitude43.44 N 80.58 W
relationship to oxygenanaerobe
sample collection device or method144 mm 0.2 micron PES filter
sample material processingDNA extraction with MoBio Powersoil kit, Illumina HiSeq sequencing PE 150 bp
size fraction selected0.2 micron
derived fromThis BioSample is a metagenomic assembly obtained from the Pumphouse #3_1 landfill metagenome BioSample: SAMN07630778
sample typemetagenomic assembly
metagenome sourcelandfill metagenome
metagenomic1
environmental-sample1
Description

Keywords: GSC:MIxS;MIMAG:6.0

Submission
University of Waterloo, Laura Hug; 2024-02-08
Accession:
SAMN39889499
ID:
39889499

BioProject

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