Metagenome-assembled genome: ERR3525229_metabat2_68

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Result Filters

Identifiers: BioSample: SAMEA115331927; Sample name: ERR3525229_metabat2_68; SRA: ERS18329113

Organism: Micromonas commoda
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Attributes

broad-scale environmental context	water
collection date	2012-05-11
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	Micromonas commoda
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958359
geographic location (longitude)	-8.09050000 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	81.2 %
contamination score	1.0 %
geographic location (latitude)	47.04380000 DD
scientific_name	Micromonas commoda
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	EukCC_v2.1.0

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525229 of study ERP117360.

Metagenome-assembled genome: ERR3525229_metabat2_68
Metagenome-assembled genome: ERR3525229_metabat2_68

biosample
type 2 lactosamine alpha-2,3-sialyltransferase isoform 5 [Homo sapiens]
type 2 lactosamine alpha-2,3-sialyltransferase isoform 5 [Homo sapiens]
gi|1020738749|ref|NP_001310293.1|

Protein
RecName: Full=Omega-amidase NIT2; AltName: Full=Nitrilase homolog 2
RecName: Full=Omega-amidase NIT2; AltName: Full=Nitrilase homolog 2
gi|74725271|sp|Q9NQR4.1|NIT2_HUMAN

Protein

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