Metagenome-assembled genome: ERR3525250_concoct_25

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Result Filters

Identifiers: BioSample: SAMEA115332045; Sample name: ERR3525250_concoct_25; SRA: ERS18329231

Organism: uncultured euryarchaeote
cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-03-19
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Southern Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured euryarchaeote
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958382
geographic location (longitude)	-55.16666700 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	88.61 %
contamination score	0.29 %
geographic location (latitude)	-61.71666700 DD
scientific_name	uncultured euryarchaeote
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525250 of study ERP117360.

Metagenome-assembled genome: ERR3525250_concoct_25
Metagenome-assembled genome: ERR3525250_concoct_25

biosample
RecName: Full=Arf-GAP with SH3 domain, ANK repeat and PH domain-containing prote...
RecName: Full=Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 3; AltName: Full=Development and differentiation-enhancing factor-like 1; AltName: Full=Protein up-regulated in liver cancer 1
gi|74751433|sp|Q8TDY4.1|ASAP3_HUMAN

Protein

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