Metagenome-assembled genome: ERR3525245_concoct_186

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Result Filters

Identifiers: BioSample: SAMEA115331995; Sample name: ERR3525245_concoct_186; SRA: ERS18329181

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-04-11
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured bacterium
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
sample derived from	SAMEA5958376
geographic location (longitude)	-66.45930000 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	90.85 %
contamination score	4.42 %
geographic location (latitude)	-51.05370000 DD
scientific_name	uncultured bacterium
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525245 of study ERP117360.

Metagenome-assembled genome: ERR3525245_concoct_186
Metagenome-assembled genome: ERR3525245_concoct_186

biosample
Drosophilidae
Drosophilidae
Genome sequencing and assembly of many species of Family Drosophilidae Genome sequencing and assembly

BioProject
RIP-like protein [Zeugodacus cucurbitae]
RIP-like protein [Zeugodacus cucurbitae]
gi|727862740|gb|JAD14289.1|

Protein
RalBP1-associated Eps domain-containing protein 2 [Zeugodacus cucurbitae]
RalBP1-associated Eps domain-containing protein 2 [Zeugodacus cucurbitae]
gi|727862734|gb|JAD14286.1|

Protein
Mugil liza isolate MPL7 tRNA-Thr gene, partial sequence; tRNA-Pro gene, complete...
Mugil liza isolate MPL7 tRNA-Thr gene, partial sequence; tRNA-Pro gene, complete sequence; and control region, partial sequence; mitochondrial
gi|937965292|gb|KP875740.1|

Nucleotide

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