Metagenome-assembled genome: ERR3525237_binner123_... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115332026; Sample name: ERR3525237_binner123_Refined_19; SRA: ERS18329212

Organism: uncultured euryarchaeote
cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; environmental samples

Attributes

broad-scale environmental context	water
collection date	2012-04-25
environmental medium	atlantic
investigation type	metagenome-assembled genome
project name	22 environmental metagenomic surface water (20 m depth) samples from two transects to the Southern and Atlantic Ocean (RV Polarstern ANT-XXVIII/4 and ANT-XXVIII/5 in 2012). Samples were filtered on 0.2µm polycarbonate filters and stored at -80°C until extraction and sequencing unsing an Illumina HiSeq 25002500.
geographic location	Atlantic Ocean
isolation source	marine metagenome
assembly software	metaspades_v3.15.3
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured euryarchaeote
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA5958367
geographic location (longitude)	-27.99130000 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	90.3 %
contamination score	0.6 %
geographic location (latitude)	-8.21130000 DD
scientific_name	uncultured euryarchaeote
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina HiSeq 2500
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR3525237 of study ERP117360.

Metagenome-assembled genome: ERR3525237_binner123_Refined_19
Metagenome-assembled genome: ERR3525237_binner123_Refined_19

biosample
Metagenome-assembled genome: ERR3525245_concoct_186
Metagenome-assembled genome: ERR3525245_concoct_186

biosample
Drosophilidae
Drosophilidae
Genome sequencing and assembly of many species of Family Drosophilidae Genome sequencing and assembly

BioProject
RIP-like protein [Zeugodacus cucurbitae]
RIP-like protein [Zeugodacus cucurbitae]
gi|727862740|gb|JAD14289.1|

Protein
RalBP1-associated Eps domain-containing protein 2 [Zeugodacus cucurbitae]
RalBP1-associated Eps domain-containing protein 2 [Zeugodacus cucurbitae]
gi|727862734|gb|JAD14286.1|

Protein

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