Metagenome-assembled genome: ERR7163068_binner12_26

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Result Filters

Organism: uncultured Pseudoalteromonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; environmental samples

Attributes

broad-scale environmental context	aquatic
collection date	2015-02-23
environmental medium	aquaculture
geographic location	South Korea
investigation type	metagenome-assembled genome
isolation source	aquaculture metagenome
project name	Illumina HiSeq 4000 paired end sequencing
sample name	ERR7163068_binner12_26
ENA first public	2024-04-04
ENA-CHECKLIST	ERC000047
External Id	SAMEA115172004
INSDC center name	EMG
INSDC last update	2024-02-01T16:07:06Z
INSDC status	public
Submitter Id	ERR7163068_binner12_26
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.15.3
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	73.49
completeness software	CheckM2_v1.0.1
contamination score	0.71
geographic location (latitude)	34.42352777
geographic location (longitude)	126.3493611
local environmental context	marine
metagenomic source	aquaculture metagenome
sample derived from	SAMEA10031319
scientific_name	uncultured Pseudoalteromonas sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR7163068 of study ERP132647.

Metagenome-assembled genome: ERR7163068_binner12_26
Metagenome-assembled genome: ERR7163068_binner12_26

biosample
Enterococcus gallinarum strain 381 16S ribosomal RNA gene, partial sequence
Enterococcus gallinarum strain 381 16S ribosomal RNA gene, partial sequence
gi|313292012|gb|HQ378522.1|

Nucleotide
plasmalemma vesicle associated protein [Homo sapiens]
plasmalemma vesicle associated protein [Homo sapiens]
gi|119605006|gb|EAW84600.1||gnl|WGS |hCP1609470

Protein
unnamed protein product [Homo sapiens]
unnamed protein product [Homo sapiens]
gi|21755418|dbj|BAC04681.1|

Protein
Homo sapiens cDNA FLJ13620 fis, clone PLACE1010947
Homo sapiens cDNA FLJ13620 fis, clone PLACE1010947
gi|10435681|dbj|AK023682.1|

Nucleotide

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