metabat2_XCR1_HOM_7852_bwa.40 MAG

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Result Filters

Organism: uncultured Clostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium; environmental samples

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-15
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	metabat2_XCR1_HOM_7852_bwa.40 MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146516
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:51Z
INSDC status	public
Submitter Id	metabat2_XCR1_HOM_7852_bwa.40 MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT
binning parameters	Default MetaBAT 2 parameters
binning software	MetaBAT 2
completeness score	92.87
completeness software	CheckM2
contamination score	2.05
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138943
scientific_name	uncultured Clostridium sp.
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138943

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

metabat2_XCR1_HOM_7852_bwa.40 MAG
metabat2_XCR1_HOM_7852_bwa.40 MAG

biosample
Metagenome or environmental sample from air metagenome
Metagenome or environmental sample from air metagenome

biosample
phosphate acetyltransferase, partial [Staphylococcus sp.]
phosphate acetyltransferase, partial [Staphylococcus sp.]
gi|2507161956|gb|WHN55127.1|

Protein
phosphate acetyltransferase, partial [Staphylococcus haemolyticus]
phosphate acetyltransferase, partial [Staphylococcus haemolyticus]
gi|2507161966|gb|WHN55132.1|

Protein
LOC127894095 [Homo sapiens]
LOC127894095 [Homo sapiens]
Gene ID:127894095

Gene

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