Metagenome-assembled genome: SRR5788340_binner13_R... - BioSample

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Result Filters

Organism: uncultured Pseudoalteromonas sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas; environmental samples

Attributes

broad-scale environmental context	water
collection date	2010-10-30
environmental medium	ocean
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Marine metagenomes from the bioGEOTRACES project Metagenome
sample name	SRR5788340_binner13_Refined_4
ENA first public	2024-03-12
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR5788340_binner13_Refined_4
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.15.3
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	99.95
completeness software	CheckM2_v1.0.1
contamination score	0.09
geographic location (latitude)	17.35162000
geographic location (longitude)	-20.81672000
local environmental context	marine
metagenomic source	marine metagenome
sample derived from	SAMN07136709
scientific_name	uncultured Pseudoalteromonas sp.
sequencing method	NextSeq 550
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5788340 of study SRP110813.