10C-St20-MC-01_bin.27.orig

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

broad-scale environmental context	polar environment [ENVO:01001703]
collection date	2019-09-13
environmental medium	marine sediment [ENVO:03000033]
geographic location	Arctic Ocean
isolation source	marine sediment
project name	Marine sediment microbiomes in East Siberian Sea
sample name	10C-St20-MC-01_bin.27.orig
ENA first public	2024-07-04
ENA-CHECKLIST	ERC000047
INSDC center name	KOPRI
INSDC status	public
Submitter Id	10C-St20-MC-01_bin.27.orig
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT (v1.2.9)
binning parameters	completeness > 70%, contamination > 10%
binning software	MaxBin2 (v2.2.6), MetaBAT2 (v2.12.1), CONCOCT (v1.0.0)
completeness score	93.63
completeness software	CheckM (v1.2.2)
contamination score	2.67
geographic location (latitude)	74.4674
geographic location (longitude)	167.9195
local environmental context	seafloor [ENVO:00000482]
metagenomic source	marine sediment metagenome
sample derived from	ERS20273662
scientific_name	uncultured Gammaproteobacteria bacterium
taxonomic identity marker	multi marker approach

Description: Metagenome-assembled genome from uncultured Gammaproteobacteria bacterium

BioProject: PRJEB76672 Marine sediment microbiomes
Retrieve all samples from this project

10C-St20-MC-01_bin.27.orig
10C-St20-MC-01_bin.27.orig

biosample
myoglobin, partial [Seicercus affinis]
myoglobin, partial [Seicercus affinis]
gi|1735623946|gb|QEN91488.1|

Protein
10C-St20-MC-01_bin.11.orig
10C-St20-MC-01_bin.11.orig

biosample
ornithine decarboxylase, partial [Seicercus affinis]
ornithine decarboxylase, partial [Seicercus affinis]
gi|1735624012|gb|QEN91500.1|

Protein
07C-BC-St07_bin.1.orig
07C-BC-St07_bin.1.orig

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample