10C-St8-MC-01_bin.4.orig

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Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

broad-scale environmental context	polar environment [ENVO:01001703]
collection date	2019-09-10
environmental medium	marine sediment [ENVO:03000033]
geographic location	Arctic Ocean
isolation source	marine sediment
project name	Marine sediment microbiomes in East Siberian Sea
sample name	10C-St8-MC-01_bin.4.orig
ENA first public	2024-07-04
ENA-CHECKLIST	ERC000047
INSDC center name	KOPRI
INSDC status	public
Submitter Id	10C-St8-MC-01_bin.4.orig
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT (v1.2.9)
binning parameters	completeness > 70%, contamination > 10%
binning software	MaxBin2 (v2.2.6), MetaBAT2 (v2.12.1), CONCOCT (v1.0.0)
completeness score	72.38
completeness software	CheckM (v1.2.2)
contamination score	5.31
geographic location (latitude)	73.6961
geographic location (longitude)	167.6757
local environmental context	seafloor [ENVO:00000482]
metagenomic source	marine sediment metagenome
sample derived from	ERS20273661
scientific_name	uncultured Gammaproteobacteria bacterium
taxonomic identity marker	multi marker approach

Description: Metagenome-assembled genome from uncultured Gammaproteobacteria bacterium

BioProject: PRJEB76672 Marine sediment microbiomes
Retrieve all samples from this project

10C-St8-MC-01_bin.4.orig
10C-St8-MC-01_bin.4.orig

biosample
Homo sapiens TGFB induced factor homeobox 2 (TGIF2), transcript variant 1, mRNA
Homo sapiens TGFB induced factor homeobox 2 (TGIF2), transcript variant 1, mRNA
gi|1677530848|ref|NM_001199514.2|

Nucleotide

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