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ERS11624213

Identifiers
BioSample: SAMEA110021455; SRA: ERS12066400
Organism
Afipia felis (cat scratch disease bacillus)
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Afipia
Attributes
collection date2018-06-20
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-RDS2A6-199-5-m2-bin160
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2024-05-24T00:31:33Z
ENA-LAST-UPDATE2024-05-24T00:31:33Z
External IdSAMEA110021455
INSDC center nameBiology Centre CAS
INSDC first public2024-05-24T00:31:33Z
INSDC last update2024-05-24T00:31:33Z
INSDC statuspublic
Submitter IdJJ-RDS2A6-199-5-m2-bin160
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
common namecat scratch disease bacillus
completeness score75.34
completeness softwarecheckm
contamination score0.95
geographic location (latitude)49.12185367
geographic location (longitude)14.74252283
metagenomic sourcefreshwater metagenome
sample derived fromERS11624213
scientific_nameAfipia felis
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-RDS2A6-199-5-m2-bin160 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia

Submission
EBI; 2024-07-25
Accession:
SAMEA110021455
ID:
42825259

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