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MIGS Eukaryotic sample from Solanum pimpinellifolium

Identifiers
BioSample: SAMN43182761; Sample name: ONT_F1_plant_final_trimmed_Pimp_01.fq; SRA: SRS22340190
Organism
Solanum pimpinellifolium
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Package
MIGS: eukaryote; version 6.0
Attributes
cultivarnone
collection date2023
broad-scale environmental contextClimate_chamber
local-scale environmental contextClimate_chamber_fans
environmental mediumgeneral cultivation soil
geographic locationNetherlands
isolation and growth conditionnot_appliccable
latitude and longitude51.59 N 5.39 E
library_id793
titleONT R10 sequencing data of F1 plants
library_strategyAMPLICON
library_sourceGENOMIC
library_selectionPCR
library_layoutsingle
platformOXFORD_NANOPORE
instrument_modelMinION
design_descriptionIndividual plants were sampled by sampling size leaf pieces per plant. Genomic DNA (gDNA) was isolated from the pooled samples using the KingFisher Flex system. Target regions were enriched via PCR, and the resulting amplicons were barcoded and sequenced using the PacBio Sequel II platform.
filetypefastq
filenamefinal_trimmed_Pimp_01.fq
Description

Keywords: GSC:MIxS;MIGS:6.0

Submission
Wageningen University & Research, Jillis Grubben; 2024-08-14
Accession:
SAMN43182761
ID:
43182761

BioProject

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