PCR tiled amplicon WGS of SARS-CoV-2

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Result Filters

Identifiers: BioSample: SAMN43185355; Sample name: CO-CDPHE-42084985; SRA: SRS22338686

Organism: Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus

Attributes

collected by	Colorado Department of Public Health and Environment
collection date	2024-07-04
geographic location	USA: Colorado
host	Homo sapiens
host disease	severe acute respiratory syndrome
isolate	CO-CDPHE-42084985
isolation source	patient isolate
GISAID accession	EPI_ISL_19333400
GISAID virus name	hCoV-19/USA/CO-CDPHE-42084985/2024
purpose of sequencing	Baseline surveillance
sequenced by	Colorado Department of Public Health and Environment

BioProject: PRJNA686984 Severe acute respiratory syndrome coronavirus 2
Retrieve all samples from this project

PCR tiled amplicon WGS of SARS-CoV-2
PCR tiled amplicon WGS of SARS-CoV-2

biosample
Enterobacteriaceae bacterium sm-1-u341f 16S ribosomal RNA gene, partial sequence
Enterobacteriaceae bacterium sm-1-u341f 16S ribosomal RNA gene, partial sequence
gi|83629170|gb|DQ305321.1|

Nucleotide
I3K28_mgt08 [Chelonoidis becki]
I3K28_mgt08 [Chelonoidis becki]
Gene ID:60235540

Gene
ND3 [Chelonoidis becki]
ND3 [Chelonoidis becki]
Gene ID:60235547

Gene
ATP8 [Chelonoidis becki]
ATP8 [Chelonoidis becki]
Gene ID:60235546

Gene

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